My thesis: PROTEINS, INTERACTIONS, AND COMPLEXES: A COMPUTATIONAL APPROACH
Slides for my thesis defense
Research mentioned in articles about my advisor Daphne Koller:
Stanford News
New York Times
A complex-based reconstruction of the S. cerevisiae interactome
Wang H, Kakaradov B, Collins SR, Karotki L, Fiedler D, Shales M, Shokat KM, Walther T, Krogan NJ, and Koller D
Molecular Cell Proteomics 2009, 8(6), 1361-81
Supporting website: complex and their interactions
A Protein Domain-Based Interactome Network for C. elegans Early Embryogenesis
Boxem M, et al.
Cell 2008, Volume 134, Issue 3, Pages 534-545
InSite: a computational method for identifying protein-protein interaction binding sites on a proteome-wide scale
Wang H, Segal E, Ben-Hur A, Li Q, Vidal M, Koller D
Genome Biology 2007, 8:R192
[Supplementary material]
Supporting website
Identifying protein-protein interaction sites on a genome-wide scale
Wang H, Segal E, Ben-Hur A, Brutlag D, Koller D
Advances in Neural Information Processing Systems (NIPS) 17, 2004.
[Supplementary material]
Discovering Molecular Pathways from Protein Interaction and Gene Expression Data
Segal E, Wang H, Koller D
Bioinformatics, 2003; 19 (Suppl 1): 264-272.
Best Student Paper Award at 11th International Conference on Intelligent Systems for Molecular Biology (ISMB)
Evolutionary analyses of the human genome
Li WH, Gu Z, Wang H, Nekrutenko A
Nature, 2001 Feb 15;409(6822):847-9.
Densities, length proportions, and other distributional features of repetitive sequences in the human genome estimated from 430 megabases of genomic sequence
Gu Z, Wang H, Nekrutenko A, Li WH
Gene, 2000 Dec 23;259(1-2):81-8.
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